A web server for assigning putative cis DNA motifs to input transcription factors (TFs) and conversely for predicting which TFs that might recognize input DNA motifs. 

Collection of tutorials developed and maintained by the worldwide Galaxy community.

Gear is a genome analysis web server hosting applications for molecular biologists to analyze Sanger traces, design PCR primers and perform DNA sequence analyses. All code is open-source and freely available in the GEAR software repositories, including the code for the web server front-end applications and the backend genomics analysis software. Among other command-line applications, the backend code includes Tracy.

GenExVis (Gene Expression Visualizer) is a desktop application for exploring and visualizing differential gene expression data. 

GeoMine enables textual, numerical and 3D searching with full chemical awareness in binding sites of the entire PDB dataset. 

A versatile software package for pan-genome analysis, including GET_HOMOLOGUES and GET_HOMOLOGUES-EST

Enables you to set up and train models for ab initio prediction of gene structure. That is, to perform "gene calling" and identify which base pairs in a genome belong to the UTR/CDS/Intron of genes.

A web tool for the interpretation of the consequences of the combined changes of gene expression levels and/or genomic mutations in the context of signalling pathways. 

HyPPI classifies a protein-protein complex concerning its interaction type into a permanent, transient or crystal artifact. 

Web tool to study the flexibility of nucleic acids, either isolated or bound to other molecules. The server offers a variety of methods to explore nucleic acid flexibility, from coarse-grained low resolution mesoscopic models to atomistic molecular dynamics simulations.